
When mornings turned chaotic and the kids needed food in a hurry, these egg muffins were my lifesaver. We were burned out on boring cereal and toast, and the kids needed something with protein they could grab on the way out. I wasn’t sure about baking eggs in muffin pans, but wow—they’re just mini egg bites that are easy to pack up and way tastier than fast food options. Each muffin is full of fluffy eggs, melty cheese, and chunky ham. So much better than anything you’d get at a drive-thru.
My teen, who’s usually skipping breakfast because she’s “just too busy,” actually wakes up a little earlier now to eat one before running out. My husband brings them for lunch, and his coworkers are always curious where he scores those awesome sandwiches. Even my mother-in-law was floored, saying they’re way better than the pricey ones you get at the store.
Must-Have Items
- Eggs, fresh - Builds that soft, protein-filled base
- Ham, flavorful - Chopped thick ham adds a bigger taste than thin cold cuts
- Cheddar cheese, sharp - Grate it yourself for the best flavor
- Go-to seasonings - Salt, pepper, garlic powder, and green onion add real taste
- Muffin tray - Silicone makes clean-up simpler; well-greased metal works too

Simple Step-by-Step Guide
- Cooling and Storage
- Let your muffins sit for a few minutes so they firm up and come out easily. Pop them in the fridge—they’ll last about four days. Enjoy cold or microwave briefly if you want them warm.
- Baking Time
- Slide the tray in and cook for about 25-30 minutes. They’re ready when firm, golden, and puffy, and a toothpick poked in the middle comes out clean.
- Filling Process
- Pour the batter into all 12 muffin cups, filling each about 3/4 full. Don’t add too much or you’ll have a spill, then sprinkle the last bit of cheese on top for extra melty goodness.
- Add-In Integration
- Take half your cheese, all the chopped ham, and the sliced green onions and mix them into the eggs. Keep the rest of the cheese to sprinkle on just before baking so you get that nice browned top.
- Egg Mixture Creation
- Crack your eggs in a big bowl, add the milk, salt, pepper, and a pinch of garlic powder, and beat everything until smooth. The milk keeps them light and fluffy, and the seasonings make them taste delicious instead of boring.
- Prep Work
- First thing—turn your oven on to 350 degrees and generously coat the muffin tray with spray. Don’t skip this or you’ll be fighting to get them out. The silicone trays are easiest, but a normal one is fine if you grease well.
I learned the hard way about greasing the pan—lost half my first batch to sticking! Now I use a ton of spray and they pop right out. Don’t be tempted to fill them to the top either, or you’ll have overflow all over your oven.
Awesome Pairings
These work great as a stand-alone breakfast, but adding some berries or toast is nice if you want more. Grab a cup of coffee, OJ, or even plain water as you head out. For a more chill brunch, I set them out with hash browns or fresh fruit.
Fun Twists
Switch things up with veggies like chopped peppers, spinach, or mushrooms for extra color and flavor. Try feta, Swiss, or even pepper jack cheese to change it up. Use sausage or turkey in place of the ham, or skip meat and go all in on cheese and veggies. Toss in herbs like parsley or chives for that fresh pop.
Storing Made Easy
They chill happily in the fridge for four days, making them meal prep champs. Want to freeze them? Just wrap each one, freeze up to three months, then thaw in the fridge overnight. To reheat, just put whichever you want in the microwave, but honestly, they taste great straight from the fridge too.

We can’t go a week without making a tray of these ham and cheese egg muffins—they take care of the always-difficult breakfast routine. It’s proof you don’t need to grab pre-packaged stuff to eat well and save time. The easiest dishes end up being the ones we use the most.
Recipe FAQs
- → Is freezing these muffins an option?
- For sure! Let them cool down fully, then pop them in freezer-safe bags. They can last up to 3 months. To warm, microwave them frozen for about 30-60 seconds.
- → Why's silicone so good for baking these?
- A silicone muffin pan makes removing these so simple. No sticking! If you’re using a metal pan, coat it generously with a non-stick spray.
- → Can I swap ham for something else?
- Totally! Cooked bacon, sausage, turkey, or even spinach and mushrooms work great. Just keep the quantity about the same.
- → How can I tell if they’re ready?
- They’re done when they look set in the center and pull away from the muffin pan edges. A clean toothpick poke will confirm it!
- → How can I make these dairy-free?
- No problem! Use a plant-based milk like almond milk, and skip the cheese or use a dairy-free alternative instead.